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Adaptive Harvesting in a Multiple-Species Coral-Reef Food Web Ecology and Society
Kramer, Daniel B; Michigan State University; dbk@msu.edu.
The utility of traditional bio-economic harvest models suffers from their dependence on two commonly used approaches. First, optimization is often assumed for harvester behavior despite system complexity and the often neglected costs associated with information gathering and deliberation. Second, ecosystem interactions are infrequently modeled despite a growing awareness that these interactions are important. This paper develops a simulation model to examine the consequences of harvesting at two trophic levels in a coral-reef food web. The model assumes adaptive rather than optimizing behavior among fishermen. The consequences of changing economic, biological, and social parameters are examined using resilience as an evaluative framework. Three general...
Tipo: Peer-Reviewed Reports Palavras-chave: Fisheries; Resource economics; Coral reefs; Resilience; Adaptive behavior; Food web; Simulation.
Ano: 2008
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Biomass changes and trophic amplification of plankton in a warmer ocean ArchiMer
Chust, Guillem; Allen, J. Icarus; Bopp, Laurent; Schrum, Corinna; Holt, Jason; Tsiaras, Kostas; Zavatarelli, Marco; Chifflet, Marina; Cannaby, Heather; Dadou, Isabelle; Daewel, Ute; Wakelin, Sarah L.; Machu, Eric; Pushpadas, Dhanya; Butenschon, Momme; Artioli, Yuri; Petihakis, Georges; Smith, Chris; Garcon, Veronique; Goubanova, Katerina; Le Vu, Briac; Fach, Bettina A.; Salihoglu, Baris; Clementi, Emanuela; Irigoien, Xabier.
Ocean warming can modify the ecophysiology and distribution of marine organisms, and relationships between species, with nonlinear interactions between ecosystem components potentially resulting in trophic amplification. Trophic amplification (or attenuation) describe the propagation of a hydroclimatic signal up the food web, causing magnification (or depression) of biomass values along one or more trophic pathways. We have employed 3-D coupled physical-biogeochemical models to explore ecosystem responses to climate change with a focus on trophic amplification. The response of phytoplankton and zooplankton to global climate-change projections, carried out with the IPSL Earth System Model by the end of the century, is analysed at global and regional basis,...
Tipo: Text Palavras-chave: Ecosystem model; Food web; Plankton; Primary production; Sea warming; Trophic amplification.
Ano: 2014 URL: http://archimer.ifremer.fr/doc/00188/29966/28481.pdf
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Body condition and energy density of juvenile streaked prochilod Prochilodus lineatus (Valenciennes, 1837) in a Neotropical floodplain Neotropical Ichthyology
Corbetta,Daiany de Fátima; Veronezzi,Ana Lúcia; Benedito,Evanilde.
ABSTRACT Variations in energetic density (E D ) and the relative condition factor (K n ) of juveniles of Prochilodus lineatus were investigated to identify whether these two variables respond similarly to environmental factors. We hypothesized that fluviometric levels in different sub-basins of the Upper Paraná River floodplain positively influence the E D and K n of juvenile fish. Temporally, the values of E D and K n were linked more directly to the dynamics of the flood pulses on the plain. Spatially, the lowest values of E D and K n were observed in the environment that was directly affected by the operation of dams, the sub-basin Paraná. Although the energy density and condition factor did not show similar results for juveniles in some of the...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Condition Factor; Food web; Habitat; Impact; Paraná basin.
Ano: 2016 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1679-62252016000400201
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Calibrating process-based marine ecosystem models: An example case using Atlantis ArchiMer
Pethybridge, Heidi; Weijerman, Mariska; Perrymann, Holly; Audzijonyte, Asta; Porobic, Javier; Mcgregor, Vidette; Girardin, Raphael; Bulman, Cathy; Ortega-cisneros, Kelly; Sinerchia, Matteo; Hutton, Trevor; Lozano-montes, Hector; Mori, Mao; Novaglio, Camilla; Fay, Gavin; Gorton, Rebecca; Fulton, Elizabeth.
Calibration of complex, process-based ecosystem models is a timely task with modellers challenged by many parameters, multiple outputs of interest and often a scarcity of empirical data. Incorrect calibration can lead to unrealistic ecological and socio-economic predictions with the modeller’s experience and available knowledge of the modelled system largely determining the success of model calibration. Here we provide an overview of best practices when calibrating an Atlantis marine ecosystem model, a widely adopted framework that includes the parameters and processes comprised in many different ecosystem models. We highlight the importance of understanding the model structure and data sources of the modelled system. We then focus on several model outputs...
Tipo: Text Palavras-chave: Best practices; Model diagnostics; Food web; Pedigree; Parameter estimation.
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00516/62723/67160.pdf
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Caractérisation et modélisation des processus de bioaccumulation des PCB chez le merlu (Merluccius merluccius) du golfe du Lion ArchiMer
Bodiguel, Xavier.
Understanding bioaccumulation mechanisms of persistent organic pollutants (POPs) is a major issue for environmental risk assessment. In this work, polychlorinated biphenyls (PCBs), a model contaminant family, has been studied in the European hake (Merluccius merluccius), a high trophic level species from the Gulf of Lions. High concentrations of PCBs were measured in hake from this area compared to those encountered in the population of the Bay of Biscay. PCB biomagnification was highlighted along its food web from marine phytoplankton, suggesting a strong influence of diet on contamination levels. The role of other biological processes was also apprehended in order to understand the high variability of observed levels. Thus, growth, sex, and also the...
Tipo: Text Palavras-chave: DEB theory; Bioenergetic model; Gulf of Lions; Biomagnification; Food web; Hake; Bioaccumulation; Polychlorinated biphenyls; Organic contaminants; Théorie DEB; Modèle bioenergétique; Golfe du Lion; Bioamplification; Réseau trophique; Merlu; Bioaccumulation; Polychlorobiphényles; Contaminants organiques.
Ano: 2008 URL: http://archimer.ifremer.fr/doc/2008/these-6490.pdf
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Comparative analysis of the food webs of two intertidal mudflats during two seasons using inverse modelling: Aiguillon Cove and Brouage Mudflat, France ArchiMer
Degre, Delphine; Leguerrier, D; Du Chatelet, E; Rzeznik, J; Auguet, Jean-christophe; Dupuy, Christine; Marquis, E; Fichet, Denis; Struski, Caroline; Joyeux, E; Sauriau, Pierre-guy; Niquil, Nathalie.
Inverse analysis was used to model the food webs of two intertidal mudflat ecosystems: Aiguillon Cove (AC) and Brouage Mudflat (BM) (south-western Atlantic coast, France). The aim of the present study is to describe and compare the functioning of these two ecosystems. The method of inverse analysis has been adapted in order to take into account, in a single calculation, two seasons: spring/summer (mid-March to mid-October) and autumn/winter (the rest of the year). Gathering all available data on the two sites, the most important gaps in knowledge were identified with the help of sensitivity analyses: they concerned mainly the exports of material by grazing fish (such as mullet Liza ramada), resuspension of microphytobenthos, and fluxes linked to microfauna...
Tipo: Text Palavras-chave: Atlantic coast; Sensitivity analysis; Tidal flat; Inverse analysis; Steady state; Food web.
Ano: 2006 URL: http://archimer.ifremer.fr/doc/2006/publication-1863.pdf
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Contamination of some aquatic species with the organochlorine pesticide chlordecone in Martinique ArchiMer
Coat, Sophie; Bocquene, Gilles; Godard, Eric.
Martinique is a French overseas department whose economy relies heavily on agriculture. Organochlorine pesticides, mainly chlordecone, were used for banana cultivation to eradicate banana weevil over a period of 40 years. Chlordecone is chemically stable,and has a strong affinity for fatty tissues. It is therefore able to bioaccumulate in animals and thereby represent a threat to ecosystems and man. Soils from banana plantations in Martinique are heavily contaminated with chlordecone. Possible transfer of these molecules from agricultural watersheds to the aquatic environment and the organisms that live in it is feared. The hypothesis that ecosystems of Martinique might be highly contaminated with this organochlorine pesticide was investigated. Chlordecone...
Tipo: Text Palavras-chave: W Atlantic; Caribbean Islands; Food web; Aquatic organisms; Chlordecone; Contamination; Pesticides.
Ano: 2006 URL: http://archimer.ifremer.fr/doc/2006/publication-1662.pdf
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Couplage de modèles trophiques et effets combinés de la pêche et du climat ArchiMer
Travers, Morgane.
Overfishing and climate change are now recognized to have important effects on marine ecosystem functioning but uncertainties remains about their combined effects. Using a modelling approach this thesis aims at assessing how the top-down effects of fishing and the bottom-up effects of climate combine themselves within the food web. A preliminary review highlighted the lack of end-to-end model applicable as it stands to our study case - the southern Benguela - and suitable to study the combined effects of fishing and climate. Coupling the plankton model ROMS-N2P2Z2D2 and the fish model OSMOSE appeared as an innovative method allowing to develop an appropriate tool meeting our objectives. The importance of two-way coupling via the predation process is first...
Tipo: Text Palavras-chave: Modèle end-to-end; Couplage de modèle; Réseau trophique; Sud- Benguela; Effets combinés; Changement climatique; Surexploitation; End-to-end model; Model coupling; Food web; Southern Benguela; Combined effects; Climate change; Overfishing.
Ano: 2009 URL: http://archimer.ifremer.fr/doc/00003/11445/7993.pdf
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Dietary breadth and trophic position of introduced European catfish Silurus glanis in the Tarn River (Garonne River basin), southwest France ArchiMer
Syvaeranta, Jari; Cucherousset, Julien; Kopp, Dorothee; Crivelli, Alain; Cereghino, Regis; Santoul, Frederic.
Although being a widely introduced and successfully established species, the European catfish Silurus glanis L. (the world’s third largest freshwater fish) remains poorly studied in its introduced areas. Here we studied the trophic ecology of non-native European catfish in a large river system in south-western France using stomach content and stable isotope analyses (SIA). We used fin samples for SIA of catfish and hence tested the validity of using fin tissue as a proxy for muscle in SIA. The mean δ15N and δ13C values analysed from fin tissues did not differ from those analysed from muscle tissue and reflected strong and consistent relationships (r2 = 0.95 for carbon and r2 = 0.98 for nitrogen). The δ15N values varied almost 5‰ among the analysed catfish...
Tipo: Text Palavras-chave: Stable isotopes; Introduced species; Top predator; River; Food web; Fin clips.
Ano: 2010 URL: http://archimer.ifremer.fr/doc/00168/27896/26159.pdf
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Diverse molecular signatures for ribosomally 'active' Perkinsea in marine sediments ArchiMer
Chambouvet, Aurelie; Berney, Cedric; Romac, Sarah; Audic, Stephane; Maguire, Finlay; De Vargas, Colomban; Richards, Thomas A..
Background: Perkinsea are a parasitic lineage within the eukaryotic superphylum Alveolata. Recent studies making use of environmental small sub-unit ribosomal RNA gene (SSU rDNA) sequencing methodologies have detected a significant diversity and abundance of Perkinsea-like phylotypes in freshwater environments. In contrast only a few Perkinsea environmental sequences have been retrieved from marine samples and only two groups of Perkinsea have been cultured and morphologically described and these are parasites of marine molluscs or marine protists. These two marine groups form separate and distantly related phylogenetic clusters, composed of closely related lineages on SSU rDNA trees. Here, we test the hypothesis that Perkinsea are a hitherto under-sampled...
Tipo: Text Palavras-chave: 454 pyrosequencing; Perkinsus; Parvilucifera; Food web; Protist; Parasite.
Ano: 2014 URL: https://archimer.ifremer.fr/doc/00374/48496/48830.pdf
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Diversité structurelle et fonctionnelle des peuplements sablo-vaseux de Bretagne sud : Impact de l'expansion d'Haploops nirae ArchiMer
Rigolet, Carine.
This thesis aims here, based on the case of the Bay of Concarneau, to understand the impact of the development of dense populations of the tubiculous amphipod Haploops nirae on the structural and functional diversity of sandy-mud communities of South Brittany. The study of Haploops communities was developed on various levels of organization of life, from the specific role of Haploops nirae to functional role of Haploops community in the ecosystem passing through the description of the community composition and its role on the biodiversity. Our results suggest firstly that the functional role of Haploops nirae alone (filtration pressure, secondary production) is potentially important. Moreover, the physical changes induced by Haploops were found to have...
Tipo: Text Palavras-chave: Ampeliscidae; Réseau trophique; Diversité fonctionnelle; Macrofaune benthique; Diversité; Bretagne Sud; Espèce ingénieure; Ampeliscidae; Benthic macrofauna diversity; Food web; Functional diversity; Engineer species; South Brittany.
Ano: 2013 URL: http://archimer.ifremer.fr/doc/00134/24549/22582.pdf
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Diversity and stability of an estuarine trophic network ArchiMer
Lobry, Jeremy; David, V; Pasquaud, S; Lepage, M; Sautour, B; Rochard, E.
Estuarine areas provide highly valuable ecosystem benefits for human populations, despite being under intense demographic, economic and ecological pressures. Hence, an understanding of the structure and function of estuarine ecosystems is essential for understanding the persistence and stability of these ecosystems and their response to perturbations. This study synthesises available data and knowledge about the Gironde estuary (SW France) in a mass-balanced trophic model to illustrate potential key patterns in the functioning of the estuarine ecosystem and key elements of its stability. In order to evaluate the total direct and indirect impact on the whole community of the 2 main sources of anthropogenic perturbations in the estuarine area, mortalities...
Tipo: Text Palavras-chave: Gironde estuary; Ecopath; Diversity; Stability; Network analysis; Food web; Estuarine ecosystem.
Ano: 2008 URL: http://archimer.ifremer.fr/doc/2008/publication-4290.pdf
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Effects of alga Fucus serratus decline on benthic assemblages and trophic linkages at its retreating southern range edge ArchiMer
Duarte, Linney; Rossi, Francesca; Docal, Cristina; Viejo, Rosa M..
Canopy-forming seaweeds are important coastal ecosystem engineers that sustain diverse multi-trophic assemblages. Their losses, with the subsequent reduction in habitat complexity, have been documented across many parts of the world and are often attributed to climate change and other anthropogenic factors. The general aim of the present study was to understand the repercussions of the decline of the canopy-forming alga Fucus serratus L. at its retreating southern range edge in the diversity and food-web linkages of intertidal assemblages. Few studies have attempted to document changes in benthic food webs following canopy loss. We examined the differences among southern locations situated at different distances from the range margin: those at the very...
Tipo: Text Palavras-chave: Canopy-forming algae; Fucus serratus; Rear range edge margin; Delta N-15; Delta C-13; Stable isotope analysis; Food web.
Ano: 2015 URL: https://archimer.ifremer.fr/doc/00626/73845/73611.pdf
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Effet d’une espèce ingénieur sur la diversité et le fonctionnement des communautés benthiques : l’habitat récifal à Sabellaria alveolata ArchiMer
Jones, Auriane.
Coastal zones worldwide are home to a large diversity of ecosystem engineers that perform key functions such as the recycling of organic matter and nutrients. The habitats resulting from the biological activity of these species are exposed to numerous disturbances such as over harvesting and trampling or via coastal modification. In this context, it is becoming key to understand the functioning of these engineered habitats and how they are affected by increasing disturbances. During my PhD, I used the reef habitat built by the gregarious tubiculous polychaete Sabellaria alveolata as a study case. First, the environmental and biotic changes associated with the establishment of a S. alveolata reef and its increasing disturbance were assessed, focusing on...
Tipo: Text Palavras-chave: Ingénieur de l’écosystème; Habitat récifal; Macrofaune benthique; Diversité fonctionnelle et isotopique; Production primaire benthique; Réseau trophique; Flux biogéochimiques; Traits biologiques; Ecosystem engineer; Reef habitat; Benthic macrofauna; Functional and isotopic diversity; Facilitation; Benthic primary production; Food web; Biogeochemical fluxes; Isoscape; Biological traits.
Ano: 2017 URL: https://archimer.ifremer.fr/doc/00498/60960/64363.pdf
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Emergence of negative trophic level-size relationships from a size-based, individual-based multispecies fish model ArchiMer
Travers-trolet, Morgane; Coppin, Franck; Cresson, Pierre; Cugier, Philippe; Oliveros-ramos, Ricardo; Verley, Philippe.
Modeling the mechanisms underlying trophic interactions between individuals allows the food web structure to emerge from local interactions, which constitutes a prerequisite for assessing how marine ecosystems respond to various anthropogenic pressures. Using a multispecies spatially explicit individual-based model, the emergence of trophic patterns was explored in the eastern English Channel ecosystem, where pelagic-benthic trophic coupling was recently studied empirically. The OSMOSE model was applied to this ecosystem by explicitly representing the life cycle of 13 fish species and one squid group, forced by pelagic and benthic prey fields that are variable over time and space. A matrix defining possible accessibilities between life stages was added to...
Tipo: Text Palavras-chave: Emergent patterns; Pelagic-benthic coupling; Individual-based model; Food web; Fish community.
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00511/62290/66748.pdf
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Gape size influences seasonal patterns of piscivore diets in three Neotropical rivers Neotropical Ichthyology
Montaña,Carmen G.; Layman,Craig A.; Winemiller,Kirk O..
We examined diets of four piscivores, two in the order Perciformes (Cichla temensis and C. orinocensis) and two in the order Characiformes (Boulengerella cuvieri and B. lucius), from the Cinaruco, La Guardia, and Ventuari rivers in Venezuela throughout the wet-dry seasonal cycle. The four piscivores consumed a phylogenetically and morphologically diverse group of fishes, reflecting the overall diversity of fish species in these rivers. At the start of the falling-water period, Cichla consumed large prey, especially the abundant, migratory, fish of the genus Semaprochilodus. As these relatively large prey became depleted during the dry season, Cichla tended to consume smaller prey. For Boulengerella, gape limitation precluded consumption of larger,...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Floodplain river; Food web; Optimal foraging theory; Predator-prey interaction; Venezuela.
Ano: 2011 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1679-62252011000300018
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Implementation of an end-to-end model of the Gulf of Lions ecosystem (NW Mediterranean Sea). I. Parameterization, calibration and evaluation ArchiMer
Bănaru, Daniela; Diaz, Fréderic; Verley, Philippe; Campbell, Rose; Navarro, Jonathan; Yohia, Christophe; Oliveros-ramos, Ricardo; Mellon, Capucine; Shin, Yunne-jai.
An end-to-end model named OSMOSE-GoL has been built for the Gulf of Lions, the main French Mediterranean fishing area. This spatialized dynamic model links the coupled hydrodynamic and biogeochemical model Eco3M-S/SYMPHONIE (LTL – low trophic level model) to OSMOSE (HTL – high trophic level model). It includes 15 compartments of living organisms, five from the LTL model (i.e. nanophytoplankton, microphytoplankton, nanozooplankton, microzooplankton and mesozooplankton) and ten from the HTL model (northern krill, southern shortfin squid, European pilchard, European anchovy, European sprat, Atlantic horse mackerel, Atlantic mackerel, blue whiting, European hake and Atlantic bluefin tuna). With the exception of northern krill and European sprat, all HTL...
Tipo: Text Palavras-chave: Ecosystem modeling; Food web; Fisheries; OSMOSE; Eco3M.
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00487/59860/65525.pdf
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Influence of substrate on the richness and composition of Neotropical cave fauna Anais da ABC (AABC)
ZEPON,TAMIRES; BICHUETTE,MARIA ELINA.
ABSTRACT The food base in the subterranean environment consists mainly of allochthonous materials. In this environment the resources are distributed generally in a heterogeneous dispersed way and the distribution of resources and their availability determine where the terrestrial invertebrates will reside, which is important for understanding ecological relationships and to establish conservation strategies. Thus, we tested how the complexity of substrates influences the richness and composition of the subterranean terrestrial invertebrates in the Presidente Olegário karst area, southeastern Brazil. We carried out collections in six caves during both dry and wet seasons, using combined collection methods. We observed different distributions in relation to...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Brazil; Communities; Conservation; Food web; Terrestrial invertebrates; Trophic resources.
Ano: 2017 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0001-37652017000401615
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Influences of geothermal sulfur bacteria on a tropical coastal food web ArchiMer
Pascal, Pierre-yves; Dubois, Stanislas; Goffette, Anais; Lepoint, Gilles.
The activity of the geothermal plant at Bouillante in Guadeloupe (French West Indies) releases thioautotrophic bacteria into the coastal environment. Fish counts reveal that fish abundance increases with higher availability of this bacterial resource. In order to evaluate the trophic role of these bacteria, isotopic compositions (C, N, S) of potential consumers were evaluated on transects at increasing distance from the source of bacteria. The 3 mobile fish species examined (Abudefduf saxatilis, Acanthurus bahianus, and Stegastes partitus) ingested and assimilated chemosynthetic bacteria. Similarly, the isotopic composition of the mobile sea urchin Diadema antillarum was different close to the discharge channel, suggesting a diet mainly composed of sulfur...
Tipo: Text Palavras-chave: Shallow vent; Food web; Sulfur bacteria; Stable isotope.
Ano: 2017 URL: http://archimer.ifremer.fr/doc/00404/51511/52256.pdf
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Investigating trophic-level variability in Celtic Sea fish predators ArchiMer
Chassot, E; Rouyer, Tristan; Trenkel, Verena; Gascuel, D.
The trophic level mean and variance, and the degree of omnivory for five Celtic Sea fish predators were estimated using a database of stomach content records characterized by a high level of taxonomic resolution. The predators occupied a high position in the food web, i.e. 4.75 for Atlantic cod Gadus morhua, 444 for haddock Melanogrammus aeglefinus, 4.88 for European hake Merluccius merluccius, 5.00 for megrim Lepidorhombus whiffiagonis and 5.27 for whiting Merlangius merlangus. The level of taxonomic resolution of the prey did not greatly affect mean T-L predator values; an effect on variance was evident, low resolution masking intra-population variability in T-L. Generalized additive models (GAM) were used to explain the variability of predator T-L...
Tipo: Text Palavras-chave: Trophic level; Predation; Omnivory; Indicator; GAM; Food web.
Ano: 2008 URL: http://archimer.ifremer.fr/doc/2008/publication-4699.pdf
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